收稿日期: 2015-08-24
修回日期: 2015-09-05
网络出版日期: 2015-09-20
基金资助
本文系湖北省科技支撑计划软科学研究类项目"医学科学数据管理与共享保障体系研究"(项目编号:2014BDF041)研究成果之一。
Investigation and Research on Linked Open Data Sets in Related Field of Medical Science
Received date: 2015-08-24
Revised date: 2015-09-05
Online published: 2015-09-20
[目的/意义]关联数据的研究对于数据资源的描述、组织、发布、检索、利用等具有重要意义。医学相关领域拥有庞大的数据规模和发达的数据共享实践,对该领域开放关联数据集进行系统的调查研究,对关联数据集的共享、管理、应用而言有重要的参考价值。[方法/过程]从平台分布、主题、格式、链入链出关系、所用词表等维度就医学相关领域的85个开放关联数据集进行调查及统计分析;从药物知识发现、语义关联搜索、智慧医疗建设等方面研究关联数据集的实际应用问题。[结果/结论]归纳医学相关领域开放关联数据集在科学研究和实践应用中的特点,以及在推动语义网发展和支持智慧医疗等方面的欠缺之处,以期促进对语义网、关联数据网络等关联数据发展与应用相关问题的进一步思考、探索和解决。
涂志芳 , 吴丹 . 医学相关领域开放关联数据集调查研究[J]. 图书情报工作, 2015 , 59(18) : 14 -23,76 . DOI: 10.13266/j.issn.0252-3116.2015.18.002
[Purpose/significance] The analysis and research on liked data are significantly important to describe, organize, retrieve and use data resources. The related field of medical science has a large volume data and advanced data sharing practice, and the systematic research on its linked open data sets is of significant value to sharing, managing and utilizing the data sets.[Method/process] This paper statistically analyzes 85 linked open data sets of medical related sciences from aspects of distribution in platforms, themes, formats, outgoing and incoming links and used vocabularies, then researches the practical usage of linked data in Drug Knowledge Discovery, Semantic Search and Smart Healthcare.[Result/conclusion] Consequently, the paper summarizes the features of linked data in scientific research and practice, as well as the weaknesses of linked open data in supporting semantic Web and smart healthcare, to promote further exploration and solution on related problems of linked data, such as semantic Web and Web of linked data.
[1] 刘炜.关联数据:概念、技术及应用展望[J].大学图书馆学报,2011(2):5-12.
[2] 房小可.基于关联数据的高校图书馆科学数据组织研究[J].图书馆建设,2013(10):31-34.
[3] Wikipedia.Linked Open Data [EB/OL].[2015-04-16].http://de.wikipedia.org/wiki/Linked_Open_Data.
[4] Moss L,Corsar D,Piper I.A linked data approach to assessing medical data[C]//Soda P,Tortorella F,Antani S,et al.Proceedings of the 25th IEEE International Symposium on Computer-Based Medical Systems.New York: The Institute of Electrical and Electronics Engineers,2012:1-4.
[5] Weiner M,Stump T E,Callahan C M,et al.A practical method of linking data from Medicare claims and a comprehensive electronic medical records system[J].International Journal of Medical Informatics.2003,71(1): 57-69.
[6] Zhu Qian,Sun Yuyin,Challa S,et al.Semantic inference using chemogenomics data for drug discovery[J].BMC Bioinformatics,2011(12):256-267.
[7] Willighagen E,Waagmeester A,Spjuth O,et al.The ChEMBL database as linked open data[J].Journal of Cheminformatics,2013(5):23-34.
[8] Chen B,Dong X,Jiao D,et al.Chem2Bio2RDF:A semantic framework for linking and data mining chemogenomic and systems chemical biology data[J].BMC Bioinformatics,2010(11):255-267.
[9] Samwald M,Jentzsch A,Bouton C,et al.Linked open drug data for pharmaceutical research and development[J].Journal of Cheminformatics,2011(3):19-24.
[10] Belleau F,Nolin M,Tourigny N,et al.Bio2RDF: Towards a mashup to build bioinformatics knowledge systems[J].Journal of Biomedical Informatics,2008,41(5):706-716.
[11] 牟冬梅,黄丽丽,张艳侠.关联数据在医学相关领域的应用现状[J].情报科学,2012(9):1389-1395.
[12] 洪娜,钱庆,方安,等.生物医学关联数据研究进展与比较分析[J].图书情报工作,2012,56(6): 123-129.
[13] 生兆花.大规模生物医学语义关联数据集的查询关键技术研究[D].天津:天津大学,2012.
[14] State of the LOD Cloud 2014[EB/OL].[2015-01-19].http://linkeddatacatalog.dws.informatik.uni-mannheim.de/state/.
[15] Schmachtenberg M,Bizer C,Paulheim H.Adoption of the linked data best practices in different topical domains[A]//Mika P,Tudorache T,Bernstein A,et al.The Semantic Web - ISWC 2014.Berlin: Springer International Publishing,2014:245-260.
[16] Mannheim Linked Data Catalog.Life sciences[EB/OL].[2015-01-20].http://linkeddatacatalog.dws.informatik.uni-mannheim.de/dataset?tags=lifesciences&tags=LinkedDataCrawl2014.
[17] Home of Bio2RDF[EB/OL].[2015-01-22].https://github.com/bio2rdf/bio2rdf-scripts/wiki.
[18] Release3[EB/OL].[2015-01-22].http://download.bio2rdf.org/release/3/release.html.
[19] Mannheim Linked Data Catalog[EB/OL].[2015-01-22].http://linkeddatacatalog.dws.informatik.uni-mannheim.de/.
[20] Linked Open Vocabularies-determ[EB/OL].[2015-01-23].http://lov.okfn.org/dataset/lov/vocabs/dcterms.
[21] Linked Open Vocabularies-foaf[EB/OL].[2015-01-23].http://lov.okfn.org/dataset/lov/vocabs/foaf.
[22] Dumontier M,Wild D.Linked Data in drug discovery[J].IEEE Internet Computing,2012,16(6): 68-71.
[23] Chen Bin,Ding Ying,Wang Huijun,et al.Chem2Bio2RDF: A linked open data portal for systems chemical biology[C]//Hoeber O, Li Yuefeng,Ji Xang,et al.Proceedings of the 2010 IEEE/WIC/ACM International Conference on Web Intelligence and Intelligent Agent Technology.Piscataway: The Institute of Electrical and Electronics Engineers,2010:232-239.
[24] Chen Huajun,Xie Guotong.The use of web ontology languages and other semantic web tools in drug discovery[J].Expert Opinion on Drug Discovery,2010,5(5):413-423.
[25] About diseasome[EB/OL].[2015-05-28].http://www.diseasome.eu/about.html.
[26] SLAP[EB/OL].[2015-05-28].http://cheminfov.informatics.indiana.edu:8080/slap/.
[27] SLAP search[EB/OL].[2015-05-28].http://cheminfov.informatics.indiana.edu:8080//slap/slap.jsp?cid=Troglitazone&gene=PPARG.
[28] TalkingData.2014移动互联网数据报告[EB/OL].[2015-05-28].https://www.talkingdata.com/index/files/2015-01/1421801673537.pdf.
[29] 李建功,唐雄燕.智慧医疗应用技术特点及发展趋势[J].中兴通讯技术,2012(2):22-26.
[30] 曹剑峰,范启勇.漫谈"智慧医疗"[J].上海信息化,2011(3):26-28.
[31] Eun-Jung K,Hyung-Jik L,Jeun-Woo L,et al.Ontology and CDSS based intelligent health data management in HealthCare Server[C]// Ardil C.Proceedings of World Academy of Science Engineering and Technology.Canakkale: World Acad Sci,Eng & Tech-waset,2007:119-123.(下转第76页)
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